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View Structure Prediction Details

Protein: gi|3831461, gi|1...
Organism: Arabidopsis thaliana
Length: 233 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3831461, gi|1....

Description E-value Query
Range
Subject
Range
gi|50756309 - gi|50756309|ref|XP_415105.1| PREDICTED: similar to polyubiquitin with 3 Ub domains [Gallus gallus]
311.0 [0..1] [227..185]

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Predicted Domain #1
Region A:
Residues: [1-64]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEISEQESVL EVKKRLGQFL QIPTSSITLF VSCWELIDGL DIEDYPIISH GTRIDLTVTP  60
   61 LFTA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.69897
Match: 2gbkA
Description: No description for 2gbkA was found.

Predicted Domain #2
Region A:
Residues: [65-233]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSFIHAAVRK IHVTVKFPSK QFTVEVDRTE TVSSLKDKIH IVENTPIKRM QLYYSGIELA  60
   61 DDYRNLNEYG ITEFSEIVVF LKSINRAKDV APTSSSLFNG ARIPVEIKDT CTISEMREGL 120
  121 QANKTLPRDE YIFVHKQRIM RENCSLRWHG VENGDTLFVF KGSISREGF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.0
Match: 1z2mA
Description: Crystal Structure of ISG15, the Interferon-Induced Ubiquitin Cross Reactive Protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.0934358341245259 bayes_pls_golite062009
protein binding 0.03789551947602 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle