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View Structure Prediction Details

Protein: gi|9757959, gi|1...
Organism: Arabidopsis thaliana
Length: 1073 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|9757959, gi|1....

Predicted Domain #1
Region A:
Residues: [1-128]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTRALLYVL QALIALKKGA QLLKYGRKGK PKFCPFRLSN DETSLIWISN GGEKRLKLAT  60
   61 VSKIVPGQRT AVFQRYLRPD KDYLSFSLIY SNRKRTLDLI CKDKVEAEVW IAGLKALISG 120
  121 QAGRSKID

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.0
Match: 1maiA
Description: STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN FROM PHOSPHOLIPASE C DELTA IN COMPLEX WITH INOSITOL TRISPHOSPHATE
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [129-622]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GWSDGGLSIA DSRDLTLSSP TNSSVCASRD FNIADSPYNS TNFPRTSRTE NSVSSERSHV  60
   61 ASDSPNMLVR GTGSDAFRVS VSSVQSSSSH GSAPDDCDAL GDVYIWGEVL CENVTKFGAD 120
  121 KNIGYLGSRS DVLIPKPLES NVVLDVHHIA CGVKHAALVS RQGEVFTWGE ASGGRLGHGM 180
  181 GKDVTGPQLI ESLAATSIDF VACGEFHTCA VTMTGEIYTW GDGTHNAGLL GHGTDVSHWI 240
  241 PKRISGPLEG LQIASVSCGP WHTALITSTG QLFTFGDGTF GVLGHGDKET VFYPREVESL 300
  301 SGLRTIAVAC GVWHAAAIVE VIVTHSSSSV SSGKLFTWGD GDKSRLGHGD KEPRLKPTCV 360
  361 SALIDHTFHR VACGHSLTVG LTTSGKVYTM GSTVYGQLGN PNADGKLPCL VEDKLTKDCV 420
  421 EEIACGAYHV AVLTSRNEVF TWGKGANGRL GHGDVEDRKA PTLVDALKER HVKNIACGSN 480
  481 FTAAICLHKW VSGT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 90.30103
Match: 1a12A
Description: Regulator of chromosome condensation RCC1
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [623-747]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EQSQCSACRQ AFGFTRKRHN CYNCGLVHCH SCSSKKSLKA ALAPNPGKPY RVCDSCHSKL  60
   61 SKVSEANIDS RKNVMPRLSG ENKDRLDKTE IRLAKSGIPS NIDLIKQLDN RAARQGKKAD 120
  121 TFSLV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [748-1073]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTSQTPLTQL KDALTNVADL RRGPPKPAVT PSSSRPVSPF SRRSSPPRSV TPIPLNVGLG  60
   61 FSTSIAESLK KTNELLNQEV VRLRAQAESL RHRCEVQEFE VQKSVKKVQE AMSLAAEESA 120
  121 KSEAAKEVIK SLTAQVKDIA ALLPPGAYEA ETTRTANLLN GFEQNGFHFT NANGQRQSRS 180
  181 DSMSDTSLAS PLAMPARSMN GLWRNSQSPR NTDASMGELL SEGVRISNGF SEDGRNSRSS 240
  241 AASASNASQV EAEWIEQYEP GVYITLLALG DGTRDLKRVR FSRRRFREQQ AETWWSENRE 300
  301 RVYEKYNIRG TDRSSVATSP ISQSQF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.0
Match: 2qagC
Description: No description for 2qagC was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle