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View Structure Prediction Details

Protein: VDAC2_ARATH
Organism: Arabidopsis thaliana
Length: 276 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VDAC2_ARATH.

Description E-value Query
Range
Subject
Range
gi|5031279 - gi|5031279|gb|AAD38145.1|AF139498_1 porin [Prunus armeniaca]
334.0 [0..1] [276..1]

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Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKGPGLFTD IGKKAKDLLT RDYNSDQKFS ISTYSASGVA LTSTALKKGG VHAADVATQY  60
   61 KYKNALFDVK IDTDSSVLTT VTLTEILPST KAIASFKV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.733 N/A N/A d.50.1 dsRNA-binding domain-like
View Download 0.733 N/A N/A d.105.1 Clathrin adaptor appendage, alpha and beta chain-specific domain
View Download 0.689 N/A N/A d.82.2 Frataxin-like
View Download 0.671 N/A N/A d.233.1 Inhibitor of vertebrate lysozyme, Ivy
View Download 0.657 N/A N/A d.237.1 Hypothetical protein YjiA, C-terminal domain

Predicted Domain #2
Region A:
Residues: [99-276]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDYNSAKLEV QYFHDHATVT AAAALKQNPL IDITATLGSP VISFGAEAGY DTTSKTFTKY  60
   61 NAGISVTKPD ACLSIILGDK GDSLKASYLH HFDEFKRTAA VGEVYRKFST NENTITVGGL 120
  121 YAIDHSTAVK AKLNNHGTLG ALLQHEVLPR SLVTVSSEID TKALEKHPRF GLSLALKP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle