YRC Public Data Repository - Protein Structure Prediction

Protein:	GLTP3_ARATH
Organism:	Arabidopsis thaliana
Length:	233 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLTP3_ARATH.

Description	E-value	Query Range	Subject Range
gi\|34872669, gi\|... - ref\|XP_213793.2\| similar to Glycolipid transfer protein [Rattus norvegicus], gi\|109496081\|ref\|XP_213...	211.0	[0..38]	[231..145]
gi\|73976553 - gi\|73976553\|ref\|XP_539498.2\| PREDICTED: similar to pleckstrin homology domain containing, family A (...	211.0	[0..17]	[232..554]
gi\|75765252 - gi\|75765252\|pdb\|1TFJ\|A Chain A, Crystal Structure Of Bovine Glycolipid Transfer Protein In Complex W...	206.0	[0..38]	[231..16]
gi\|109099519 - gi\|109099519\|ref\|XP_001089145.1\| PREDICTED: glycolipid transfer protein isoform 2 [Macaca mulatta] GLTP_PANTR - Glycolipid transfer protein OS=Pan troglodytes GN=GLTP PE=2 SV=1 GLTP - glycolipid transfer protein CCDS9136.1_1 - null ENSCJAT00000018919 - null	204.0	[0..38]	[231..6]
gi\|114612637 - gi\|114612637\|ref\|XP_527709.2\| PREDICTED: pleckstrin homology domain containing, family A (phosphoino...	203.0	[0..17]	[232..301]

Back

Predicted Domain #1

Region A:
Residues: [1-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRKRCEMEE TTKKKKMTEI GSAIEELSVL SIAKTTIVTT EKEAINIINL PLKPLLSFCN  60
   61 IIVQVLDKIG PTMAVLRHDI DQNIQRLEKM WESDPLVYSN LVEILRKEAK EGSSRKPKSC 120
  121 SRAALWLTRA MDFTLALLQR LVKDMSQNME QAIEECYNLT IKPWHGWISS AAFKVALKLV 180
  181 PNNNTFINVL AAKDETHQMV QDDITSLISL LIPLLSQLHS ILELYEVSKL KSP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.154902
Match:	1tfjA
Description:	Crystal structure of Bovine Glycolipid transfer protein in complex with a fatty acid
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits