| Protein: | SM3L3_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 1277 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SM3L3_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
490.0 | [0..230] | [1276..101] |
|
|
463.0 | [0..392] | [1276..106] |
|
|
427.0 | [0..323] | [1276..50] |
|
|
408.0 | [0..233] | [1276..13] |
|
|
390.0 | [0..329] | [1276..169] |
|
|
389.0 | [0..225] | [1276..2] |
|
|
385.0 | [0..225] | [1276..3] |
|
|
381.0 | [0..411] | [1276..46] |
|
Region A: Residues: [1-246] |
1 11 21 31 41 51
| | | | | |
1 MAIVDDAEMR LTESEAVSSS DDRKIVADTP DFIDESSLVI RTTTGVRISA LPAEQSLVDS 60
61 DGSNSEVTLP AKDEVISDGF TCVNKEIVES DSFREQNLEI GEPDLDVENR KEAMIIDSIE 120
121 NSVVEIVSSA SGDDCNVKVE VVEPELLVEN LVVAKEEEEM IVDSIEDSVV EIVSTASGCD 180
181 CNVKVEVVDP ELCVDNLVVV KEEEMIADSI AESVVETVSR GLDYECVDVK VKEEPDLGTK 240
241 LEEDSV
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [247-366] |
1 11 21 31 41 51
| | | | | |
1 FPNVLEKKDE VIKVLEDQPS EINKKLEQEN DDLFSSGDSD GTSAKRRKME MESYAPVGVE 60
61 SCILAPTPLR VVKPEKLDTP EVIDLESEKS YTHVKMEPVE EIKVEAVKMS SQVEDVKFSR 120
121
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [367-500] |
1 11 21 31 41 51
| | | | | |
1 EQKSVYVKKE PVGARKVKVE DGDFPVEKDW YLVGRSLVTA TSTSKGRKLE DNEIVNFTFS 60
61 SVAKWKVPNI VRFSTKRCGE IGRLPMEWSN WAVSLLRSGK VKMLGRCVAA PPFLTMMQEI 120
121 MLYVSFYIHS SIFT
|
| Detection Method: | |
| Confidence: | 19.769551 |
| Match: | PF08797.2 |
| Description: | No description for PF08797.2 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.559 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.324 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.260 | N/A | N/A | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.222 | N/A | N/A | d.58.9 | RuBisCO, large subunit, small (N-terminal) domain |
| View | Download | 0.210 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.210 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
|
Region A: Residues: [501-581] |
1 11 21 31 41 51
| | | | | |
1 DVSKSTWRIG SSPNLESTLH PLLQLFKHLT IKPYQKAEFT PEELNSRKRS LNLEDDYDER 60
61 AALLAIAKRR KGCQQSLEQN K
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.502 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.502 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.476 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.476 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.462 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.454 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.382 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.359 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.328 | d.58.17 | Metal-binding domain |
| View | Download | 0.303 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.232 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
|
Region A: Residues: [582-663] |
1 11 21 31 41 51
| | | | | |
1 DEEEAPESYM NRVVGAADSY NLEEMEAPST LTCNLRPYQK QALYWMSESE KGIDVEKAAE 60
61 TLHPCWEAYR ICDERAPSIY LN
|
| Detection Method: | |
| Confidence: | 66.69897 |
| Match: | 1z3iX |
| Description: | Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [664-1277] |
1 11 21 31 41 51
| | | | | |
1 IFSGEATIQF PTATQMARGG ILADAMGLGK TVMTIALILA RPGRGNPENE DVLVADVNAD 60
61 KRNRKEIHMA LTTVKAKGGT LIICPMALLS QWKDELETHS KPDTVSVLVY YGGDRTHDAK 120
121 AIASHDVVLT TYGVLTSAYK QDMANSIFHR IDWYRIVLDE AHTIKSWKTQ AAKATFELSS 180
181 HCRWCLTGTP LQNKLEDLYS LLCFLHVEPW CNWAWWSKLI QKPYENGDPR GLKLIKAILR 240
241 PLMLRRTKET RDKEGSLILE LPPTDVQVIE CEQSEAERDF YTALFKRSKV QFDQFVAQGK 300
301 VLHNYANILE LLLRLRQCCN HPFLVMSRAD SQQYADLDSL ARRFLDNNPD SVSQNAPSRA 360
361 YIEEVIQDLR DGNSKECPIC LESADDPVLT PCAHRMCREC LLTSWRSPSC GLCPICRTIL 420
421 KRTELISCPT DSIFRVDVVK NWKESSKVSE LLKCLEKIKK SGSGEKSIVF SQWTSFLDLL 480
481 EIPLRRRGFE FLRFDGKLAQ KGREKVLKEF NETKQKTILL MSLKAGGVGL NLTAASSVFL 540
541 MDPWWNPAVE EQAIMRIHRI GQKRTVFVRR FIVKDTVEER MQQVQARKQR MIAGALTDEE 600
601 VRSARLEELK MLFR
|
| Detection Method: | |
| Confidence: | 48.39794 |
| Match: | 2fdcA |
| Description: | No description for 2fdcA was found. |
