| Protein: | TPP1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 340 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TPP1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
324.0 | [0..1] | [340..1] |
|
|
240.0 | [0..76] | [325..1] |
|
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230.0 | [0..76] | [325..1] |
|
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224.0 | [0..80] | [325..1] |
|
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218.0 | [0..95] | [339..3] |
|
|
217.0 | [0..77] | [325..1] |
|
|
216.0 | [0..80] | [329..1] |
|
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215.0 | [0..76] | [340..1] |
|
|
213.0 | [0..100] | [339..7] |
|
Region A: Residues: [1-143] |
1 11 21 31 41 51
| | | | | |
1 MAIRITFTYS THVARNLVGT RVGPGGYCFE SLVRPRFFSH KRDFDRSPRN RPASMYGSIA 60
61 RELIGEGSQS PLVMGLISIL KSTTGHESST MNVLGVSSFK ASSIIPFLQG SKWIKNPPVI 120
121 DDVDKGGTVC DDDDDKESRN GGS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.472 | a.72.1 | Functional domain of the splicing factor Prp18 |
| View | Download | 0.472 | a.72.1 | Functional domain of the splicing factor Prp18 |
| View | Download | 0.428 | d.189.1 | PX domain |
| View | Download | 0.428 | d.189.1 | PX domain |
| View | Download | 0.424 | a.118.8 | TPR-like |
| View | Download | 0.417 | b.1.8 | Cu,Zn superoxide dismutase-like |
| View | Download | 0.412 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.382 | a.1.1 | Globin-like |
| View | Download | 0.230 | a.278.1 | Description not found. |
|
Region A: Residues: [144-233] |
1 11 21 31 41 51
| | | | | |
1 GWVNKLLSVC SEDAKAAFTA VTVSILFRSA LAEPKSIPST SMYPTLDKGD RVMAEKVSYF 60
61 FRKPEVSDIV IFKAPPILLE YPEYGYSSND
|
| Detection Method: | |
| Confidence: | 2.77 |
| Match: | 1t7dA |
| Description: | Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [234-340] |
1 11 21 31 41 51
| | | | | |
1 VFIKRIVASE GDWVEVRDGK LFVNDIVQEE DFVLEPMSYE MEPMFVPKGY VFVLGDNRNK 60
61 SFDSHNWGPL PIENIVGRSV FRYWPPSKVS DTIYHDQAIT RGPVAVS
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| Detection Method: | |
| Confidence: | 20.30103 |
| Match: | 1b12A |
| Description: | Type 1 signal peptidase |
Matching Structure (courtesy of the PDB): |
|
