YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CLPS1_ARATH
Organism: Arabidopsis thaliana
Length: 159 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLPS1_ARATH.

Description E-value Query
Range
Subject
Range
gi|42409470, gi|... - gi|50946021|ref|XP_482538.1| unknown protein [Oryza sativa (japonica cultivar-group)], gi|42409470|d...
gi|125561637 - gi|125561637|gb|EAZ07085.1| hypothetical protein OsI_29332 [Oryza sativa Indica Group]
165.0 [0..1] [159..1]

Back

Predicted Domain #1
Region A:
Residues: [1-159]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METAICGRLA LAPSSLFNSK SGDKHLVSKG PCVNRSILMT LSTSAALGKG GGVLDKPIIE  60
   61 KTTPGRESEF DLRKSKKIAP PYRVILHNDN FNKREYVVQV LMKVIPGMTV DNAVNIMQEA 120
  121 HINGLAVVIV CAQADAEQHC MQLRGNGLLS SVEPDGGGC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.69897
Match: 1mbuC
Description: Adaptor protein ClpS (YljA)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle