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View Structure Prediction Details

Protein: TBR_ARATH
Organism: Arabidopsis thaliana
Length: 608 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TBR_ARATH.

Description E-value Query
Range
Subject
Range
TBL1_ARATH - Protein trichome birefringence-like 1 OS=Arabidopsis thaliana GN=TBL1 PE=2 SV=1
551.0 [0..1] [607..1]

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Predicted Domain #1
Region A:
Residues: [1-254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASDAVKYMP IHGGGTTATT AADIKSFFSA LKPKKTSTFA YAFVITFVSF TLFFAFSPSP  60
   61 NSSSPWFSNI FTSSSTTTTS DNTSGSQFSS IFSYILPNVT STKPTNRSSD ATDSLSVNAT 120
  121 SPPLNSNSKN GTLQTPAPET HTPVAKNTTF ESPIVNGTNP DAKNNTSSHP LLSDKSSTTG 180
  181 SNNQSRTTAD TETVNRNQTT SPAPSKAPVS VDLKTNSSSN SSTASSTPKK QTKTVDLVSS 240
  241 VKQEIEKWSE SLKN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.1
Match: 1h1kI
Description: THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [255-426]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CEFFDGEWIK DDSYPLYKPG SCNLIDEQFN CITNGRPDKD FQKLKWKPKK CSLPRLNGAI  60
   61 LLEMLRGRRL VFVGDSLNRN MWESLVCILK GSVKDETKVY EARGRHHFRG EAEYSFVFQD 120
  121 YNCTVEFFVS PFLVQEWEIV DKKGTKKETL RLDLVGKSSE QYKGADVIVF NT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [427-608]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GHWWTHEKTS KGEDYYQEGS NVYHELAVLE AFRKALTTWG RWVEKNVNPA KSLVFFRGYS  60
   61 ASHFSGGQWN SGGACDSETE PIKNDTYLTP YPSKMKVLEK VLRGMKTPVT YLNITRLTDY 120
  121 RKDGHPSVYR KQSLSEKEKK SPLLYQDCSH WCLPGVPDSW NEILYAELIV KLNQLSQTQR 180
  181 KT

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 70.327902
Match: PF03005.6
Description: No description for PF03005.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle