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View Structure Prediction Details

Protein: OSB4_ARATH
Organism: Arabidopsis thaliana
Length: 360 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OSB4_ARATH.

Description E-value Query
Range
Subject
Range
gi|21554639 - gi|21554639|gb|AAM63642.1| unknown [Arabidopsis thaliana]
408.0 [0..1] [360..1]

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Predicted Domain #1
Region A:
Residues: [1-236]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFLGRSISK SIRPSLNSTA RKSWVLSSQQ FLSTSSTESS SRTRGGGGGN RAEKSSEEWP  60
   61 RPMEVPYQPK IANSIDLIGY VHQPVQFDST LDGKFWAGTV ISHEPSSDSK SESDSSSNFW 120
  121 IPVLFEGDLA HTANSYLKKN DRVHITGQIL GDVIQSGANS DQAHVQLFKS FHGSFSHQVM 180
  181 VRDLHYIEGS KAMPKVLPTL DQNEGVLKHS ASVQRGREFG TNLWFDLVDK PNEWCD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.0
Match: 2cwaA
Description: Crystal Structure Of The Single-stranded DNA Binding Protein From Thermus Thermophilus HB8
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [237-360]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YREMKQNGSV NPKHPDFKKK DGSQALWLNN APTEILSELK DVKFDIPKYA KQPKAGEESW  60
   61 KDLVDNMNKW WDNRVDKRTP KSPDFKHKET GVGLWLSDSP SWVLEKLPPP KSKTSDIYGV 120
  121 QEMF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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