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View Structure Prediction Details

Protein: gi|15225441, gi|...
Organism: Arabidopsis thaliana
Length: 425 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15225441, gi|....

Description E-value Query
Range
Subject
Range
gi|78708421, gi|... - gi|78708421|gb|ABB47396.1| expressed protein [Oryza sativa (japonica cultivar-group)], gi|110289009|...
463.0 [0..1] [422..1]

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Predicted Domain #1
Region A:
Residues: [1-284]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPSGLKETQ LRESNNNQKV HPQPMEESIN QNPEAMEALI SNLFGNISSL KSAYIELQSA  60
   61 HTPYDPEKIQ AADKVVISEL KNLSEMKHFY RENNPKPVCV SPQDSRLAAE IQEQQSLLKT 120
  121 YEVMVKKFQS EIQNKDSEIT QMLQKIEEAN QKRLKLEKNL KLRGMSTNEG SNGDGNMQFP 180
  181 DLTTELYVST YEAAAKAVHD FSKPLINMMK AAGWDLDSAA NSIEPDVVYA KRPHKKYAFE 240
  241 SYICQRMFSG FQQKNFSVNS ESAAVMANDD TDTFFRQFLA LKDM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.69897
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [285-425]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPLDALGTNP DSNFGIFCRS KYLLLVHPKM EASFFGNLDQ RDYVTGGGHP RTAFYQAFLK  60
   61 LAKSIWILHR LAYSFDPAAK IFQVKKGSEF SDSYMESVVK NIVVDEKEEN PRVGLMVMPG 120
  121 FWIGGSVIQS RVYVSGVKVL E

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle