YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15227183, gi\|...
Organism:	Arabidopsis thaliana
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15227183, gi|....

Description	E-value	Query Range	Subject Range
gi\|114572319 - gi\|114572319\|ref\|XP_514173.2\| PREDICTED: similar to ribosomal protein S25 [Pan troglodytes]	161.0	[0..5]	[124..56]
gi\|109018521 - gi\|109018521\|ref\|XP_001108187.1\| PREDICTED: similar to 40S ribosomal protein S25 [Macaca mulatta]	161.0	[0..16]	[124..187]
gi\|73955048 - gi\|73955048\|ref\|XP_536549.2\| PREDICTED: similar to 40S ribosomal protein S25 [Canis familiaris]	151.0	[0..7]	[124..68]
gi\|125778350, gi... - gi\|54639683\|gb\|EAL29085.1\| GA19768-PA [Drosophila pseudoobscura], gi\|125778350\|ref\|XP_001359933.1\| G...	142.0	[0..49]	[124..39]
gi\|94405344, gi\|... - gi\|94405344\|ref\|XP_991342.1\| PREDICTED: similar to 40S ribosomal protein S25 [Mus musculus], gi\|9440...	141.0	[0..22]	[124..13]
gi\|119569329, gi... - gi\|88988836\|ref\|XP_942473.1\| PREDICTED: similar to 40S ribosomal protein S25 [Homo sapiens], gi\|1195...	140.0	[0..14]	[124..4]
gi\|47188265 - gi\|47188265\|emb\|CAF87311.1\| unnamed protein product [Tetraodon nigroviridis]	138.0	[0..9]	[124..9]
gi\|109483864, gi... - gi\|109485269\|ref\|XP_001071065.1\| PREDICTED: similar to 40S ribosomal protein S25 [Rattus norvegicus]...	137.0	[0..9]	[124..20]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDFIRRIQI SCVVSLTDSR HQRRTKSHHH PLNPPNPVAE SRKRSKGKQK EKVNNMVLFD  60
   61 QATYDKLMSE APKFKLITPS ILSDRLRING SLARKAIRDL MVKGTIRMVS THSSQQINTR 120
  121 ATCLT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.02
Match:	2j5oA
Description:	No description for 2j5oA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits