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View Structure Prediction Details

Protein: gi|6223650, gi|2...
Organism: Arabidopsis thaliana
Length: 338 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6223650, gi|2....

Description E-value Query
Range
Subject
Range
gi|28973617, gi|... - gi|9758909|dbj|BAB09485.1| NAM (no apical meristem)-like protein [Arabidopsis thaliana], gi|42567931...
314.0 [0..2] [329..4]
gi|108707929, gi... - gi|34902148|ref|NP_912420.1| Putative NAM (no apical meristem) protein [Oryza sativa (japonica culti...
311.0 [0..1] [325..1]

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Predicted Domain #1
Region A:
Residues: [1-190]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEEGGVVVN QGGDQEVVDL PPGFRFHPTD EEIITHYLKE KVFNIRFTAA AIGQADLNKN  60
   61 EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATVSGY WKATGKDKEI FRGKGCLVGM 120
  121 KKTLVFYTGR APKGEKTNWV MHEYRLDGKY SYHNLPKTAR DEWVVCRVFH KNAPSTTITT 180
  181 TKQLSRIDSL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.0
Match: 1ut4A
Description: Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [191-338]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DNIDHLLDFS SLPPLIDPGF LGQPGPSFSG ARQQHDLKPV LHHPTTAPVD NTYLPTQALN  60
   61 FPYHSVHNSG SDFGYGAGSG NNNKGMIKLE HSLVSVSQET GLSSDVNTTA TPEISSYPMM 120
  121 MNPAMMDGSK SACDGLDDLI FWEDLYTS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.354 d.14.1 Ribosomal protein S5 domain 2-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle