YRC Public Data Repository - Protein Structure Prediction

Protein:	COX10_ARATH
Organism:	Arabidopsis thaliana
Length:	431 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX10_ARATH.

Description	E-value	Query Range	Subject Range
gi\|108883176, gi... - gi\|157119461\|ref\|XP_001653393.1\| protoheme ix farnesyltransferase [Aedes aegypti], gi\|108883176\|gb\|E...	228.0	[0..25]	[401..51]
gi\|85837310, gi\|... - gi\|86144411\|ref\|ZP_01062743.1\| protoheme IX farnesyltransferase [Vibrio sp. MED222], gi\|85837310\|gb\|...	225.0	[0..92]	[378..39]
gi\|84387586, gi\|... - gi\|84387586\|ref\|ZP_00990604.1\| protoheme IX farnesyltransferase [Vibrio splendidus 12B01], gi\|843776...	224.0	[0..92]	[378..39]
COXX_TRIEI - Protoheme IX farnesyltransferase OS=Trichodesmium erythraeum (strain IMS101) GN=ctaB PE=3 SV=1	222.0	[0..77]	[396..2]
gi\|90332750, gi\|... - gi\|90415427\|ref\|ZP_01223361.1\| probable cytochrome c oxidase assembly factor [marine gamma proteobac... gi\|90415427\|ref\|... - probable cytochrome c oxidase assembly factor [marine gamma proteobacterium HTCC2207]	222.0	[0..94]	[377..12]
gi\|56202374, gi\|... - gi\|56202374\|dbj\|BAD73736.1\| putative heme A:farnesyltransferase [Oryza sativa Japonica Group], gi\|56...	221.0	[0..81]	[430..69]
gi\|46100862, gi\|... - gi\|71023219\|ref\|XP_761839.1\| hypothetical protein UM05692.1 [Ustilago maydis 521], ref\|XP_403307.1\| ...	221.0	[0..51]	[401..1169]
COXX_ANAVT - Protoheme IX farnesyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ctaB PE=3 ...	220.0	[0..84]	[382..7]
gi\|67857670, gi\|... - gi\|67920186\|ref\|ZP_00513706.1\| Protoheme IX farnesyltransferase [Crocosphaera watsonii WH 8501], gi\|...	220.0	[0..91]	[381..13]
UBIA_SACD2 - 4-hydroxybenzoate octaprenyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM ...	220.0	[0..78]	[376..1]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRRSVVYRF SSRISVSSSL PNPRLIPWSR ELCAVNSFSQ PPVSTESTAK LGITGVRSDA  60
   61 NRVFATATAA ATATATTGEI SSRVAALAGL G

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [92-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HHYARCYWEL SKAKLSMLVV ATSGTGYILG TGNAAISFPG LCYTCAGTMM IAASANSLNQ  60
   61 IFEISNDSKM KRTMLRPLPS GRISVPHAVA WATIAGASGA CLLASKTNML AAGLASANLV 120
  121 LYAFVYTPLK QLHPINTWVG AVVGAIPPLL GWAAASGQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [250-431]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISYNSMILPA ALYFWQIPHF MALAHLCRND YAAGGYKMLS LFDPSGKRIA AVALRNCFYM  60
   61 IPLGFIAYDW GLTSSWFCLE STLLTLAIAA TAFSFYRDRT MHKARKMFHA SLLFLPVFMS 120
  121 GLLLHRVSND NQQQLVEEAG LTNSVSGEVK TQRRKKRVAQ PPVAYASAAP FPFLPAPSFY 180
  181 SP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits