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View Structure Prediction Details

Protein: gi|15224236, gi|...
Organism: Arabidopsis thaliana
Length: 212 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15224236, gi|....

Description E-value Query
Range
Subject
Range
gi|12642614 - gi|12642614|gb|AAK00311.1|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga ...
153.0 [0..2] [210..1504]

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Predicted Domain #1
Region A:
Residues: [1-138]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPAWSHAK AQWVVAMLAL LVGSAMATEP YYYSSPPPPY EYKSPPPPVK SPPPPYEYKS  60
   61 PPPPVKSPPP PYYYHSPPPP VKSPPPPYVY SSPPPPVKSP PPPYYYHSPP PPVKSPPPPY 120
  121 YYHSPPPPVK SPPPPYYY

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.27
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #2
Region A:
Residues: [139-212]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSPPPPVKSP PPPYYYHSPP PPVKSPPPPY YYHSPPPPVK SPPPPYLYSS PPPPVKSPPP  60
   61 PVYIYASPPP PTHY

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.01
Match: 1q1qA
Description: Crystal structure of human pregnenolone sulfotransferase (SULT2B1a) in the presence of PAP
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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