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View Structure Prediction Details

Protein: gi|9279599, gi|8...
Organism: Arabidopsis thaliana
Length: 119 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9279599, gi|8....

Description E-value Query
Range
Subject
Range
gi|73999378 - gi|73999378|ref|XP_535071.2| PREDICTED: similar to transcription elongation factor A (SII) 1 [Canis ...
123.0 [0..17] [117..338]

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Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKSRESEFL FCNLCGTMLV LKSTKYAECP HCKTTRNAKD IIDKEIAYTV SAEDIRRELG  60
   61 ISLFGEKTQA EAELPKIKKA CEKCQHPELV YTTRQTRSAD EGQTTYYTCP NCAHRFTEG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.30103
Match: 1i3qI
Description: RBP9 subunit of RNA polymerase II
Matching Structure (courtesy of the PDB):

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Created and Maintained by: Michael Riffle