YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PAP2_ARATH
Organism: Arabidopsis thaliana
Length: 310 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAP2_ARATH.

Description E-value Query
Range
Subject
Range
gi|18377868 - gi|18377868|gb|AAL67120.1| AT4g22240/T10I14_70 [Arabidopsis thaliana]
380.0 [0..1] [310..1]

Back

Predicted Domain #1
Region A:
Residues: [1-153]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVQLSTQF SCQTRVSISP NSKSISKPPF LVPVTSIIHR PMISTGGIAV SPRRVFKVRA  60
   61 TDTGEIGSAL LAAEEAIEDV EETERLKRSL VDSLYGTDRG LSASSETRAE IGDLITQLES 120
  121 KNPTPAPTEA LFLLNGKWIL AYTSFVNLFP LLS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [154-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGIVPLIKVD EISQTIDSDN FTVQNSVRFA GPLGTNSIST NAKFEIRSPK RVQIKFEQGV  60
   61 IGTPQLTDSI EIPEYVEVLG QKIDLNPIRG LLTSVQDTAS SVARTISSQP PLKFSLPADN 120
  121 AQSWLLTTYL DKDIRISRGD GGSVFVLIKE GSPLLNP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle