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View Structure Prediction Details

Protein: TPS19_ARATH
Organism: Arabidopsis thaliana
Length: 602 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TPS19_ARATH.

Description E-value Query
Range
Subject
Range
TPSGD_VITVI - (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1
749.0 [0..56] [601..18]

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Predicted Domain #1
Region A:
Residues: [1-602]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEATRMGFGG LSVPLSLTPN LSLIPQRLLD KHNLSLKPVK IHHLVCVRST KSSDDLETSR  60
   61 PSTYFSPSLW GDHFLSVSLD HAEFVELERE IETMKPLVKD MLMSSQSSDK EKIRLIHLLV 120
  121 SLGSSYHFDK EIQDILKHSF TKLDGIIVEE DDLETISIMF EVFRLYGHKM SCDAFDRFRG 180
  181 GDGRFKESLA KDVRGMLQLF EVAHLGTLSE DIMDEALRFT RNHLESLTSG NVSSASPHIL 240
  241 KHIQNSLYIP RYCNIEVLVA REYISYYEQE EGYNEILLKF AKLNFNFCQC HYIQEIKTLT 300
  301 KWWKDLDLAS KLPYIRDRSV ESHLGGLGPY FEPQYSLGRI IVAKTIMIIV VADDTYDAHA 360
  361 TIPEATVLTE YFQRLNIGAD DKLSGYLRIV LESVFEVMGE IEQEMSPKGR SYSVKQVLER 420
  421 FKIIAKAYKQ LTEWARKGHV PTFDEYMKVG LVTAGMGDYA GYCFIGMEDI NEKEAFEWLN 480
  481 SNPLLIDALN VLFRIANDVG TYETEINRGE VANGLNCYMK QYGVTKEEAS RELRKMYIYN 540
  541 KKVVVEEFMN SHDRVPRQVL LRCLNFARLF DVIYTEGDGY SEPKGKIEHF MTSLYVHPIP 600
  601 LS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 5eauA
Description: 5-EPI-ARISTOLOCHENE SYNTHASE FROM NICOTIANA TABACUM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.87397377711135 bayes_pls_golite062009
transferase activity 1.34929557841705 bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups 1.22586398285056 bayes_pls_golite062009
prenyltransferase activity 0.302854173865421 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle