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View Structure Prediction Details

Protein: gi|15450715, gi|...
Organism: Arabidopsis thaliana
Length: 277 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15450715, gi|....

Description E-value Query
Range
Subject
Range
gi|195379390, gi... - gi|27374358|gb|AAO01098.1| CG10754-PA [Drosophila virilis], gi|195379390|ref|XP_002048462.1| GJ13983...
413.0 [0..6] [257..8]

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Predicted Domain #1
Region A:
Residues: [1-136]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDREWGSKPG SGGAASGQNE AIDRRERLRR LALETIDLAK DPYFMRNHLG SYECKLCLTL  60
   61 HNNEGNYLAH TQGKRHQTNL AKRAAREAKD APTKPQPLKR NVSVRRTVKI GRPGYRVTKQ 120
  121 YDPELQQRSL LFQIEY

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.986
Match: 2crrA
Description: Solution structure of ArfGap domain from human SMAP1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [137-214]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEIEDNIKPR HRFMSSYEQK VQPYDKSYQY LLFAAEPYEI IAFKVPSTEV DKSTPKFFSH  60
   61 WDPDSKMFTL QVYFKPTK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [215-277]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEPNKPQSAV GANGLPPPPP PPPHQAQPPP PPPSGLFPPP PPPMANNGFR PMPPAGGFGH  60
   61 PNM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle