YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SIP_ARATH
Organism: Arabidopsis thaliana
Length: 344 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SIP_ARATH.

Description E-value Query
Range
Subject
Range
gi|50758853 - gi|50758853|ref|XP_417448.1| PREDICTED: similar to histocompatibility 13; presenilin-like protein 3 ...
373.0 [0..18] [324..639]

Back

Predicted Domain #1
Region A:
Residues: [1-223]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNCERFANL ALAGLTLAPL VVRVNPNLNV ILTACITVYV GCFRSVKDTP PTETMSKEHA  60
   61 MRFPLVGSAM LLSLFLLFKF LSKDLVNAVL TAYFFVLGIV ALSATLLPAI RRFLPNPWND 120
  121 NLIVWRFPYF KSLEVEFTKS QVVAGIPGTF FCAWYAWKKH WLANNILGLS FCIQGIEMLS 180
  181 LGSFKTGAIL LAGLFFYDIF WVFFTPVMVS VAKSFDAPIK LLF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [224-344]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTGDALRPYS MLGLGDIVIP GIFVALALRF DVSRRRQPQY FTSAFIGYAV GVILTIVVMN  60
   61 WFQAAQPALL YIVPAVIGFL ASHCIWNGDI KPLLAFDESK TEEATTDESK TSEEVNKAHD 120
  121 E

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle