YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CDPKK_ARATH
Organism: Arabidopsis thaliana
Length: 583 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDPKK_ARATH.

Description E-value Query
Range
Subject
Range
gi|16215471 - gi|16215471|emb|CAC82999.1| calcium-dependent protein kinase 3 [Nicotiana tabacum]
463.0 [0..1] [583..1]

Back

Predicted Domain #1
Region A:
Residues: [1-122]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNTCVGPNL NPNGFLQSVS AAVWRNQKPD DSIKSSKDES SRKKNDKSVN GDDSNGHVSS  60
   61 TVDPAPSTLP TPSTPPPPVK MANEEPPPKP ITENKEDPNS KPQKKEAHMK RMASAGLQID 120
  121 SV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.98
Match: 1q1qA
Description: Crystal structure of human pregnenolone sulfotransferase (SULT2B1a) in the presence of PAP
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [123-431]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGRKTENLKD IYSVGRKLGQ GQFGTTFLCV DKKTGKEFAC KTIAKRKLTT PEDVEDVRRE  60
   61 IQIMHHLSGH PNVIQIVGAY EDAVAVHVVM EICAGGELFD RIIQRGHYTE KKAAELARII 120
  121 VGVIEACHSL GVMHRDLKPE NFLFVSGDEE AALKTIDFGL SVFFKPGETF TDVVGSPYYV 180
  181 APEVLRKHYS HECDVWSAGV IIYILLSGVP PFWDETEQGI FEQVLKGDLD FISEPWPSVS 240
  241 ESAKDLVRRM LIRDPKKRMT THEVLCHPWA RVDGVALDKP LDSAVLSRLQ QFSAMNKLKK 300
  301 IAIKVIAES

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 73.69897
Match: 2jc6A
Description: No description for 2jc6A was found.

Predicted Domain #3
Region A:
Residues: [432-583]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSEEEIAGLK EMFKMIDTDN SGHITLEELK KGLDRVGADL KDSEILGLMQ AADIDNSGTI  60
   61 DYGEFIAAMV HLNKIEKEDH LFTAFSYFDQ DGSGYITRDE LQQACKQFGL ADVHLDDILR 120
  121 EVDKDNDGRI DYSEFVDMMQ DTGFGKMGLK VS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.30103
Match: 2aaoA
Description: Regulatory apparatus of Calcium Dependent protein kinase from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle