YRC Public Data Repository - Protein Structure Prediction

Protein:	LSG12_ARATH
Organism:	Arabidopsis thaliana
Length:	589 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LSG12_ARATH.

Description	E-value	Query Range	Subject Range
gi\|115530783 - gi\|115530783\|emb\|CAL49373.1\| novel protein similar to human hypothetical protein FLJ11301 [Xenopus t...	270.0	[0..1]	[481..1]
gi\|114555589 - gi\|114555589\|ref\|XP_001169466.1\| PREDICTED: guanine nucleotide binding protein-like 2 (nucleolar) is...	265.0	[0..3]	[524..50]
gi\|52306841, gi\|... - gi\|52424789\|ref\|YP_087926.1\| GTP-binding protein EngA [Mannheimia succiniciproducens MBEL55E], gi\|52...	262.0	[0..84]	[465..2]
gi\|85099145 - gi\|85099145\|ref\|XP_960724.1\| hypothetical protein NCU04166 [Neurospora crassa OR74A] gi\|32405786, gi\|... - gi\|32405786\|ref\|XP_323506.1\| hypothetical protein ( (AL513445) conserved hypothetical protein [Neuro...	261.0	[0..4]	[587..7]
gi\|170718421, gi... - gi\|32029623\|ref\|ZP_00132617.1\| COG1160: Predicted GTPases [Haemophilus somnus 2336], gi\|170718421\|re...	260.0	[0..84]	[465..2]
gi\|23467150, gi\|... - gi\|23467150\|ref\|ZP_00122734.1\| COG1160: Predicted GTPases [Haemophilus somnus 129PT], gi\|113461468\|r...	259.0	[0..84]	[465..2]
gi\|81242044, gi\|... - gi\|82777896\|ref\|YP_404245.1\| putative GTP-binding factor [Shigella dysenteriae Sd197], gi\|81242044\|g...	258.0	[0..86]	[465..16]
gi\|81246371, gi\|... - gi\|82544960\|ref\|YP_408907.1\| putative GTP-binding factor [Shigella boydii Sb227], gi\|81246371\|gb\|ABB... gi\|24113840, gi\|... - ref\|NP_708350.1\| putative GTP-binding factor [Shigella flexneri 2a str. 301], gb\|AAN44057.1\| putati...	258.0	[0..86]	[465..16]
DER_SHIB3 - GTPase Der OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=der PE=3 SV=1	258.0	[0..86]	[465..3]
gi\|75237743, gi\|... - gi\|75237743\|ref\|ZP_00721759.1\| COG1160: Predicted GTPases [Escherichia coli E110019], gi\|193068430\|r...	258.0	[0..86]	[465..3]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKSEKTSLG RSLVKHHNHM IQESKDKGKY YKNLQKKVLE SVTEVSDIDA IIEQAEEAER  60
   61 LYTINHSSST PLSINLDTNS SSSV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [85-475]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IAAEEWREQQ KIEEALHASS LQVPRRPPWT PEMSVEELDA NEKQAFLNWR RMLVSLEENE  60
   61 KLVLTPFEKN LDIWRQLWRV LERSDLIVMV VDARDPLFYR CPDLEAYAQE IDEHKKIMLL 120
  121 VNKADLLPTD VREKWAEYFR LNNILFVFWS AIAATATLEG KVLKEQWRQP DNLQKTDDPD 180
  181 IMIYGRDELL SRLQFEAQEI VKVRNSRAAS VSSQSWTGEY QRDQAVVGFV GYPNVGKSST 240
  241 INALVGQKRT GVTSTPGKTK HFQTLIISDE LMLCDCPGLV FPSFSSSRYE MIASGVLPID 300
  301 RMTEHREAIQ VVADKVPRRV IESVYNISLP KPKTYERQSR PPHAAELLKS YCASRGYVAS 360
  361 SGLPDETKAA RLILKDYIGG KLPHYAMPPG M

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.69897
Match:	2hjgA
Description:	No description for 2hjgA was found.

Predicted Domain #3

Region A:
Residues: [476-589]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQADEPDIED TQELEDILEG SESDDSAVGD ETENEQVPGI DDVLDDLSSF DLANGLKSSK  60
   61 KVTAKKQTAS HKQHKKPQRK KDRTWRVQNT EDGDGMPSVK VFQKPANTGP LTMR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.221849
Match:	1egaA
Description:	GTPase Era, N-terminal domain; GTPase Era C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits