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View Structure Prediction Details

Protein: OPR3_ARATH
Organism: Arabidopsis thaliana
Length: 391 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OPR3_ARATH.

Description E-value Query
Range
Subject
Range
gi|5059115 - gi|5059115|gb|AAD38925.1|AF132212_1 OPDA-reductase homolog [Arabidopsis thaliana]
408.0 [0..1] [391..1]

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Predicted Domain #1
Region A:
Residues: [1-391]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAAQGNSNE TLFSSYKMGR FDLSHRVVLA PMTRCRALNG VPNAALAEYY AQRTTPGGFL  60
   61 ISEGTMVSPG SAGFPHVPGI YSDEQVEAWK QVVEAVHAKG GFIFCQLWHV GRASHAVYQP 120
  121 NGGSPISSTN KPISENRWRV LLPDGSHVKY PKPRALEASE IPRVVEDYCL SALNAIRAGF 180
  181 DGIEIHGAHG YLIDQFLKDG INDRTDQYGG SIANRCRFLK QVVEGVVSAI GASKVGVRVS 240
  241 PAIDHLDATD SDPLSLGLAV VGMLNKLQGV NGSKLAYLHV TQPRYHAYGQ TESGRQGSDE 300
  301 EEAKLMKSLR MAYNGTFMSS GGFNKELGMQ AVQQGDADLV SYGRLFIANP DLVSRFKIDG 360
  361 ELNKYNRKTF YTQDPVVGYT DYPFLAPFSR L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 113.0
Match: 1q45A
Description: 12-0xo-phytodienoate reductase isoform 3
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity 3.50791144647902 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors 2.11027907327307 bayes_pls_golite062009
catalytic activity 1.94749091175302 bayes_pls_golite062009
coenzyme binding 0.99234662301893 bayes_pls_golite062009
binding 0.724672865863266 bayes_pls_golite062009
nucleic acid binding 0.350068675013616 bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors 0.0276497014195508 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle