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View Structure Prediction Details

Protein: LWD2_ARATH
Organism: Arabidopsis thaliana
Length: 346 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LWD2_ARATH.

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
330.0 [0..1] [346..1230]

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Predicted Domain #1
Region A:
Residues: [1-346]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTSSDQIQN GSEEQSKRSE IYTYEAPWQI YAMNWSIRRD KKYRLAITSL IEQYPNRVEI  60
   61 VQLDESNGEI RSDPNLCFEH PYPPTKTSFI PDKECQRPDL LATSSDFLRL WRISDDESRV 120
  121 ELKSCLSSDK NSEFSGPITS FDWNEAEPRR IGTSSIDTTC TIWDIEREVV DTQLIAHDKE 180
  181 VYDIAWGGVG VFASVSEDGS VRVFDLRDKE HSTIIYESGE PSTPLVRLSW NKQDPRYMAT 240
  241 VIMGSAKIVV LDIRFPALPV VELQRHQASV NAIAWAPHSS SHICSAGDDS QALIWDISSM 300
  301 GQHVEGGLDP ILAYTAGAEV EQLQWSSSQP DWVAIAFSNK LQILRV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.69897
Match: 2gnqA
Description: No description for 2gnqA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle