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View Structure Prediction Details

Protein: gi|15230094, gi|...
Organism: Arabidopsis thaliana
Length: 440 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15230094, gi|....

Description E-value Query
Range
Subject
Range
gi|83575348, gi|... - gi|83592434|ref|YP_426186.1| membrane protease FtsH catalytic subunit [Rhodospirillum rubrum ATCC 11...
302.0 [0..10] [435..1]

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Predicted Domain #1
Region A:
Residues: [1-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLKLIKSMV QAITRPIQYL IISYLRYLVG PPSLTHHDNQ VTVIIEETSE NGRINVIHGA  60
   61 TQAYLFDKIN LDFVEEREFD DIYQGAKLKW RIFVDKNNIG NIPKQCFELR FDEKHRDLVF 120
  121 DSYIPFVESK AKEIKSKKRI LEMHTYSHCC DTWETKILDH HSSFETIVMK EDLKRRLIDD 180
  181 IDLFISKEDF YKRVGRHWMR YYLLHGLPGA GKTSLVAAIA KYLNFDVYNI TQGVKTDFDT 240
  241 RRLIRRVEDS SILLVEDIDT SLEGSKVALS QLLSSLTWPW SNGKARVVIF TTNNKERFDQ 300
  301 TLLCRMEMKI YMGHCCFEDF KTLASNYLGI SHDNDAPHRL YPDIKRLIDG QAVTPGQVVE 360
  361 ELMKSQDVDV ALQSLVRYSS SKENDHIDDD LPQIPEETRK NSNLDSKPRK SQTIIVEALN 420
  421 QVRCNETETG SNIDYSSNEK 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 67.69897
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle