YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PRP3_ARATH
Organism: Arabidopsis thaliana
Length: 313 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRP3_ARATH.

Description E-value Query
Range
Subject
Range
gi|12642614 - gi|12642614|gb|AAK00311.1|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga ...
173.0 [0..13] [299..1439]

Back

Predicted Domain #1
Region A:
Residues: [1-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAITRSSLAI CLILSLVTIT TADYYSPSSP PVYKSPEHKP TLPSPVYTPP VYKPTLSPPV  60
   61 YTKPTIPPPV YTPPVYKHTP SPPVYTKPTI PPPVYTPPVY KPTLSPPVYT KPTIPPPVYT 120
  121 PPVYKPTPVY TKPTIPPPVY TPPVYKPTPS PPVYKKSPSY SSPPPPYVPK PTYTPTTKP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [180-313]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YVPEILKAVD GIILCKNGYE TYPILGAKIQ IVCSDPASYG KSNTEVVIYS NPTDSKGYFH  60
   61 LSLTSIKDLA YCRVKLYLSP VETCKNPTNV NKGLTGVPLA LYGYRFYPDK NLELFSVGPF 120
  121 YYTGPKAAPA TPKY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle