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View Structure Prediction Details

Protein: gi|18400874, gi|...
Organism: Arabidopsis thaliana
Length: 180 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18400874, gi|....

Description E-value Query
Range
Subject
Range
gi|114658678 - gi|114658678|ref|XP_510560.2| PREDICTED: similar to SPC18 protein [Pan troglodytes]
190.0 [0..8] [166..185]

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Predicted Domain #1
Region A:
Residues: [1-180]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFIGETVDS IKSIKIRQVL TQAITLGMIV TSALIIWKAL ICVTGSESPV VVVLSESMEP  60
   61 GFQRGDILFL RMTDEPIRAG EIVVFSVDGR EIPIVHRAIK VHERGDTKAV DVLTKGDNND 120
  121 IDDIGLYAEG QLWLHRHHIM GRAVGFLPYV GWVTIIMTEK PIIKYILIGA LGLLVITSKD 180
  181 

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Detection Method: PSI-BLAST
Confidence: 16.69897
Match: 1t7dA
Description: Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle