| Protein: | PUB27_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 420 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUB27_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
166.0 | [0..127] | [419..91] |
|
Region A: Residues: [1-140] |
1 11 21 31 41 51
| | | | | |
1 MRKDDLCITV PTFFRCPISL DVMKSPVSLC TGVTYDRASI QRWLDGGNNT CPATMQILQN 60
61 KDFIPNRTLQ RLIEIWSDSV RRRTCVESAE LAAPTRDEIA DAIDRVKIEK EERDDREVLS 120
121 KIVRFGRESD DNRGFLAGKD
|
| Detection Method: |  |
| Confidence: | 13.522879 |
| Match: | 1t1hA |
| Description: | NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.0938889867773109 | bayes_pls_golite062009 |
|
Region A: Residues: [141-420] |
1 11 21 31 41 51
| | | | | |
1 DFVKLLVDLI NQVDFETTSA AKSLVVQEAV KILSTIRSKV SDRRRFSNLI LTNGRDRLSV 60
61 IVYLFKTGNV ELKIDCAGLL EFIAVDAESK LLIAERDGLI TELMKSISKD SDLSLIESSL 120
121 SCLIAISSPK RVKLNLLREK LIGDVTKLLS DSTSSLSVSV TEKCLKLLEI LASTKEGRSE 180
181 ICGGDGECLK TVVKKLMKVS TAATEHAVTV LWSVSYLFKE DKALEAVTSV NGVTKILLLL 240
241 QSNCSPAVRR MLTDLLKVFK VNSRSCLSAY DTKTTHIMPF
|
| Detection Method: | |
| Confidence: | 36.154902 |
| Match: | 1bk5A |
| Description: | Karyopherin alpha |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.373576425899935 | bayes_pls_golite062009 |
