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View Structure Prediction Details

Protein: MYRS2_ARATH
Organism: Arabidopsis thaliana
Length: 598 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MYRS2_ARATH.

Description E-value Query
Range
Subject
Range
TPSGD_VITVI - (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1
689.0 [0..30] [597..5]

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Predicted Domain #1
Region A:
Residues: [1-598]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLCIGSAP IYQNACIHNF RLQRPRRFIS KSMTKTMPDA NPLDLRRRSG NYQPSSWDHS  60
   61 YLLSIENKYV NEKEVITRHV LKKKVKKMLE EVETKSRLEK LELIDDLQKL GVSYHFEQEI 120
  121 NNILTNFHLE NGKNIWKCDK EEDLHATALE FRLLRQHGFG VSEDIFDVII DKIESNTFKS 180
  181 DNITSIITLY EASYLSTKSD TKLHKVIRPF ATEQIRNFVD DESETYNIML REMAIHALEI 240
  241 PYHWRMRRLE TRWYIDAYEK KHDMNLFLAE FAKIDFNIVQ TAHQEDVKYV SCWWKETGLG 300
  301 SQLHFVRDRI VENYFWTVGM IYEPQFGYIR RIVAIVAALI TVIDDIYDIY GTPEELELFT 360
  361 AMVQNWDINR LDELPEYMKL CFLTLFNEIN AMGCDVLKCK NIDVIPYFKK SWADLCKAYL 420
  421 VEAKWYKGGY KPSVEEYMQN AWISISAPTM LIHFYCAFSG QISVQILESL VQQQQDVVRC 480
  481 SATVLRLAND LATSPDELAR GDVLKSVQCY MHETGVSEEE ARTHVQQMIS HTWDEMNYEA 540
  541 RTAARSSSLL SRRFVETAMN LARMSQCMYQ HGDGHGCPDK AKIVDRVQTL LVDPIPLD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 5eauA
Description: 5-EPI-ARISTOLOCHENE SYNTHASE FROM NICOTIANA TABACUM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.87397377711135 bayes_pls_golite062009
transferase activity 1.34929557841705 bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups 1.22586398285056 bayes_pls_golite062009
prenyltransferase activity 0.302854173865421 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle