YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|25411052, gi|...
Organism: Arabidopsis thaliana
Length: 476 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25411052, gi|....

Description E-value Query
Range
Subject
Range
gi|113548993, gi... - gi|115453843|ref|NP_001050522.1| Os03g0571900 [Oryza sativa (japonica cultivar-group)], gi|113548993...
326.0 [0..2] [472..622]

Back

Predicted Domain #1
Region A:
Residues: [1-202]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEPFLPQDE QIVPCKATWK SGQLNVELKK VSRLAVPMAT VTIAQYLLPV ISVMVAGHNG  60
   61 ELQLSGVALA TSFTNVSGFS IMFGLVGSLE TLSGQAYGAK QYEKMGTYTY SAISSNIPIC 120
  121 VLISILWIYM EKLLISLGQD PDISRVAGSY ALRLIPTLFA HAIVLPLTRF LLAQGLVLPL 180
  181 LYFALTTLLF HIAVCWTLVS AL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 29.420216
Match: PF01554.9
Description: No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [203-476]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLGSNGAALA ISVSFWFFAM TLSCYVRFSS SCEKTRRFVS QDFLSSVKQF FRYGVPSAAM  60
   61 LCLEWWLFEL LILCSGLLQN PKLETSVLSI CLTTATLHYV IPVGVAAAVS TRVSNKLGAG 120
  121 IPQVARVSVL AGLCLWLVES SFFSILLFAF RNIIGYAFSN SKEVVDYVAD LSPLLCLSFV 180
  181 LDGFTAVLNG VARGCGWQHI GALNNVVAYY LVGAPVGIYL AFSCELNGKG LWCGVVVGSA 240
  241 VQAIILAIVT ASMNWKEQVR AYYNTFFFFF NSLK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 33.552842
Match: PF01554.9
Description: No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle