YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|15219417, gi|...
Organism: Arabidopsis thaliana
Length: 1248 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|15219417, gi|....

Predicted Domain #1
Region A:
Residues: [1-164]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKARHQQLF QHSMEPGYRN ETVPQPFMPD QTGSASANMR PPNSNGSDVK AVHNFSIQTG  60
   61 EEFSLEFMRD RVIPQRSSNP NGAGDMNYNT GYMELRGLIG ISHTGSECAS DVSRFSTVEN 120
  121 GTSDIERTNS SLHEFGNKLN HVQSAPQALL SKDSSVGNLH GYKN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [165-309]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSSSASGSVT AKVKILCSFG GKILPRPGDS KLRYVGGETH IISIRKDISW QELRQKILEI  60
   61 YYQTRVVKYQ LPGEDLDALV SVSSEEDLQN MLEEYNEMEN RGGSQKLRMF LFSISDMDDA 120
  121 LLGVNKNDGD SEFQYVVAVN GMDIG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.522879
Match: 2cu1A
Description: Solution structure of the PB1 domain of human protein kinase MEKK2b
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [310-432]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGKNSTLLGL DSSSANNLAE LDVRNTEGIN TIAGDVVGVG ASQLMVNGFQ QTSAQQSESI  60
   61 PPSSSLHYSQ SIPLNAAYQL QQSVPPSSAL HYPQSITPGS SLQYPQSITP GSSYQYPQSI 120
  121 IPG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [433-581]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SASSYGIYPQ YYGHVVQHGE RERFPLYPDH SSNYSAIGET TSSIPIQGHV SQQGGWAEGY  60
   61 PYPGSTPKST QALAEEQKVS SDMKIREEVE PENRKTPGND HQNPPQIDDV EVRNHNQVRE 120
  121 MAVATTPPSQ DAHLLPPSRD PRQNTTAKP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [582-682]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATYRDAVITG QVPLSGIEDQ LSTSSSTYAP VHSDSESNLI DLNYPEPEQS SQRVYCSERI  60
   61 PREQLELLNR LSKSDNSLSS QFVTSESPAN TAQQDSGKEA V

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [683-1248]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKSHDEFKTV NDDANHHTHK DVETIFEKVG VSDETLESEP LHKIVNPDDA NKNRVVNGAD  60
   61 TEIGVSNLSH VNAAMSHVIP EEQASLQGDI LIDINDRFPR DFLSEIFSQA ISEDTSTVRP 120
  121 YPHDGAAVSM NVQNHDRKNW SYFQQLAEDQ FIQRDVVLDQ ADSRIPSDRK DGGESSRLPY 180
  181 VSPLSRDGIS TNLANPQLTL GQDYGGNFSE KDGGGTGSIP PALENEQMKV TESEEFGAMV 240
  241 ENLRTPDSEP KDEKTETRHA ALPPLGSEFD YSGLQIIKNE DLEELRELGS GTFGTVYHGK 300
  301 WRGSDVAIKR IKKSCFAGRS SEQERLTGEF WGEAEILSKL HHPNVVAFYG VVKDGPGGTL 360
  361 ATVTEYMVDG SLRHVLVRKD RHLDRRKRLI IAMDAAFGME YLHSKNTVHF DLKCDNLLVN 420
  421 LKDPSRPICK VGDFGLSKIK RNTLVSGGVR GTLPWMAPEL LNGSSSKVSE KVDVFSFGIV 480
  481 LWEILTGEEP YANMHYGAII GGIVNNTLRP TIPGFCDDEW RTLMEECWAP NPMARPSFTE 540
  541 IAGRLRVMSS AATSTQSKPS AHRASK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 89.39794
Match: 2h8hA
Description: No description for 2h8hA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle