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View Structure Prediction Details

Protein: gi|6049879, gi|1...
Organism: Arabidopsis thaliana
Length: 302 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6049879, gi|1....

Description E-value Query
Range
Subject
Range
gi|87162512 - gi|87162512|gb|ABD28307.1| HMG-I and HMG-Y, DNA-binding [Medicago truncatula]
171.0 [0..1] [302..1]

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Predicted Domain #1
Region A:
Residues: [1-302]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIRKNTKLS SVLLSTAGCG GERPDTYVCH LNQSPWDVIP VSSSGDCELT NLVDSSWFLP  60
   61 LSSSSSSSSP PLIHKFIGEE DSFNGNVSLG DCNDTAQRFN SSVSSNQSLV SVEKLNLNAA 120
  121 EEDKYAISPE VEDPMDQSDD YDKKSEALEP NSPVKTSGDD EKVVVTIPTA PKRGRPRGSG 180
  181 KKVSAPALKN PYEFYYYSGF GPRWGRKRGG SDDEKMVIND SKKSRSSASS SSDEDGHKTA 240
  241 AFGGGSVSFD EFDFVDEDYD VMEQDQGSDH GRKKKNEKMI MMKKTMKKGR KPVKERSLKS 300
  301 LM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle