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View Structure Prediction Details

Protein: CDA4_ARATH
Organism: Arabidopsis thaliana
Length: 251 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDA4_ARATH.

Description E-value Query
Range
Subject
Range
gi|3818579 - gi|3818579|gb|AAC69570.1| cytidine deaminase 4 [Arabidopsis thaliana]
292.0 [0..1] [251..1]

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Predicted Domain #1
Region A:
Residues: [1-251]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQQLKFILT REEAASKGVS RPSDLVKLEE EAMILARAPI SGVQDAVLGL ASSDRIFLGV  60
   61 NVEFEGLPLH HSISAEQFLV ANLALNFEQE LHACLIPSRF YLESFEEDVP LLLVPQNNRL 120
  121 AHSDPFSAAE ICSNPEHCSH LKCRALTAAN KSNAQYSKCP SGVALICEGE VYGGWCIESA 180
  181 AYNLSLGPVQ AALVDFMARG EGKGFEMITG AVLVEMNDAK VSQEATARIL LKTIAPGCNF 240
  241 SVFRCHKTAE N

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.69897
Match: 1af2A
Description: Two-domain cytidine deaminase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.177505784657 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle