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View Structure Prediction Details

Protein: AB3C_ARATH
Organism: Arabidopsis thaliana
Length: 1514 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for AB3C_ARATH.

Predicted Domain #1
Region A:
Residues: [1-233]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFLGSTTGS GTLAMLFSFS ESILPLDSRS FLLKPLFLRW LSGFLHSVLL LVLFFSWVRK  60
   61 KIRGDSGVTE SLKDRRDFGF KSALFCSLAL SLLNLVLMSL SGFYWYESGW LDNEQLVSSL 120
  121 GFLLGMVSWG VLSICLHRCR DCEHKKAPFL LRLWLVFYLV VSCYSLVVDF VMYERRETVP 180
  181 VHLLVFDIVA FIAAVFLGYV AVLKKDRSNS NGVLEEPLLN GGDSRVGGDD SVE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [234-341]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNKTNGSGEA TPYSRAGILS LLTFSWMSPL IDIGNKKTLD LEDVPQLHDT DSVVGLAPKF  60
   61 RSMLESPDGG ERSGVTTFKL IKALYFTAQW EILVTAFFAF IYTVASYV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [342-414]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPALIDTFVQ YLNGRRQYNH EGYVLVITFF AAKIVECLSQ RHWFFRLQKV GIRMRSALVA  60
   61 MIYEKGLTLS CQS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [415-638]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQGRTSGEII NFMTVDAERI GNFSWYMHDP WMVLLQVGLA LWILYRNLGL ASIAALVATI  60
   61 IVMLINFPFG RMQERFQEKL MEAKDSRMKS TSEILRNMRI LKLQGWEMKF LSKIFDLRKS 120
  121 EEGWLKKYVY NSAVISFVFW GAPTLVSVST FGACILLGIP LESGKILSAL ATFRILQEPI 180
  181 YNLPDTISMI VQTKVSLDRL ASYLCLDNLQ PDIVERLPKG SSDV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [639-895]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVEVINSTLS WDVSSSNPTL KDINFKVFPG MKVAVCGTVG SGKSSLLSSL LGEVPKVSGS  60
   61 LKVCGTKAYV AQSPWIQSGK IEDNILFGKP MERERYDKVL EACSLSKDLE ILSFGDQTVI 120
  121 GERGINLSGG QKQRIQIARA LYQDADIYLF DDPFSAVDAH TGSHLFKEVL LGLLCSKSVI 180
  181 YVTHQVEFLP AADLILVMKD GRISQAGKYN DILNSGTDFM ELIGAHQEAL AVVDSVDANS 240
  241 VSEKSALGQE NVIVKDA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 73.69897
Match: 2cbzA
Description: No description for 2cbzA was found.

Predicted Domain #6
Region A:
Residues: [896-1514]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IAVDEKLESQ DLKNDKLESV EPQRQIIQEE EREKGSVALD VYWKYITLAY GGALVPFILL  60
   61 GQVLFQLLQI GSNYWMAWAT PVSEDVQAPV KLSTLMIVYV ALAFGSSLCI LLRATLLVTA 120
  121 GYKTATELFH KMHHCIFRSP MSFFDSTPSG RIMSRASTDQ SAVDLELPYQ FGSVAITVIQ 180
  181 LIGIIGVMSQ VSWLVFLVFI PVVAASIWYQ RYYIAAAREL SRLVGVCKAP LIQHFSETIS 240
  241 GATTIRSFSQ EFRFRSDNMR LSDGYSRPKF YTAGAMEWLC FRLDMLSSLT FVFSLVFLVS 300
  301 IPTGVIDPSL AGLAVTYGLS LNTLQAWLIW TLCNLENKII SVERILQYAS VPSEPPLVIE 360
  361 SNRPEQSWPS RGEVEIRDLQ VRYAPHMPLV LRGITCTFKG GLRTGIVGRT GSGKSTLIQT 420
  421 LFRIVEPSAG EIRIDGVNIL TIGLHDLRLR LSIIPQDPTM FEGTMRSNLD PLEEYTDDQI 480
  481 WEALDKCQLG DEVRKKEQKL DSSVSENGDN WSMGQRQLVC LGRVLLKRSK ILVLDEATAS 540
  541 VDTATDNLIQ KTLREHFSDC TVITIAHRIS SVIDSDMVLL LSNGIIEEYD TPVRLLEDKS 600
  601 SSFSKLVAEY TSRSSSSFD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 153.0
Match: 3b5wA
Description: No description for 3b5wA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle