YRC Public Data Repository - Protein Structure Prediction

Protein:	PUM1_ARATH
Organism:	Arabidopsis thaliana
Length:	968 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUM1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|20465637 - gi\|20465637\|gb\|AAM20149.1\| putative pumilio/Mpt5 family RNA-binding protein [Arabidopsis thaliana]	643.0	[0..1]	[968..1]
gi\|87241276 - gi\|87241276\|gb\|ABD33134.1\| Nucleic acid binding NABP [Medicago truncatula]	546.0	[0..1]	[957..1]
gi\|114576341, gi... - gi\|114576341\|ref\|XP_001140758.1\| PREDICTED: pumilio homolog 2 isoform 11 [Pan troglodytes], gi\|11457...	526.0	[0..3]	[949..31]
gi\|109102137, gi... - gi\|109102137\|ref\|XP_001095963.1\| PREDICTED: similar to pumilio homolog 2 isoform 4 [Macaca mulatta],...	526.0	[0..3]	[949..31]
gi\|168267226 - gi\|168267226\|dbj\|BAG09669.1\| pumilio homolog 2 [synthetic construct] gi\|85567007, gi\|... - gi\|85567007\|gb\|AAI12049.1\| Pumilio homolog 2 [Homo sapiens], gi\|85566710\|gb\|AAI12047.1\| Pumilio homo...	523.0	[0..3]	[949..31]

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Predicted Domain #1

Region A:
Residues: [1-639]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPELGRRPM HRGNEDSSFG DDYEKEIGVL LGEQQRRQVE ADELERELNL FRSGSAPPTV  60
   61 DGSVSAAGGL FSGGGGAPFL EFGGVNKGNG FGGDDEEFRK DPAYLSYYYA NMKLNPRLPP 120
  121 PLMSREDLRV AQRLKGSNNV LGGVGDRRKV NDNRSLFSMP PGFEGEKTGA SASEWDANGL 180
  181 IGLPGLGLGG KQKSFADIFQ ADMGHGHPVA QQPSRPASRN TFDENVDSNN NLSPSASQGI 240
  241 GAPSPYSYAA VLGSSLSRNG TPDPQAIARV PSPCLTPIGS GRMSSNDKRN TSNQSPFNGV 300
  301 TSGLNESSDL VNALSGLNLS CSVGLDDRSQ AEQDVEKVRN YMFGLQGGHN EVNQHEFPNK 360
  361 SDQAHKATGS LRNSQLRGPH GSAYNGGVGL ANPYQQLDSP NYCLNNYALN PAVASMMANQ 420
  421 LGNNNFAPMY DNVSALGFSG MDSRHHGRGF VSSGQNLSES RNLGRFSNRM MGGGAGLQSH 480
  481 MVDPMYNQYA DSLDLLNDPS MDRNFMGGSS YMDMLELQRA YLGAQKSQYG VPYKSGSPNS 540
  541 HSYYGSPTFG SNMSYPGSPL AHHGMPNSLM SPYSPMRRDE VNMRFPSATR NYSGGLMGSW 600
  601 HMDASFDEGF GSSMLEEFKS NKTRGFELSE IAGHVVEFS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.09691
Match:	1y0fB
Description:	No description for 1y0fB was found.

Predicted Domain #2

Region A:
Residues: [640-968]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDQYGSRFIQ QKLETATTDE KNMVYEEIMP QALVLMTDVF GNYVIQKFFE HGLPPQRREL  60
   61 AEKLFDHVLP LSLQMYGCRV IQKAIEVVDL DQKIKMVKEL DGHVMRCVRD QNGNHVVQKC 120
  121 IECVPEENIE FIISTFFGHV VTLSTHPYGC RVIQRVLEHC HDPDTQSKVM EEILSTVSML 180
  181 AQDQYGNYVV QHVLEHGKPD ERTVIIKELA GKIVQMSQQK FASNVVEKCL TFGGPEEREL 240
  241 LVNEMLGTTD ENEPLQAMMK DQFANYVVQK VLETCDDQQR ELILTRIKVH LTALKKYTYG 300
  301 KHVVARIEKL VAAGERRMAL QSLTQPQMA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	147.0
Match:	1ib2A
Description:	Pumilio 1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits