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View Structure Prediction Details

Protein: POED2_ARATH
Organism: Arabidopsis thaliana
Length: 343 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for POED2_ARATH.

Description E-value Query
Range
Subject
Range
gi|154152031, gi... - gi|76637075|ref|XP_870187.1| PREDICTED: similar to Lamin B receptor isoform 2 [Bos taurus], gi|15415...
233.0 [0..4] [343..256]

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Predicted Domain #1
Region A:
Residues: [1-70]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVELEIVWLV RGAWITVWIV SILPLVIASI PTSKLNSFRE LVLSFAGRGK ILHPSSQKFT  60
   61 IPQKCFAHFY 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [71-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VIGVVWTTLL LAATWMYACK MAPLSSEEFQ LSDIASRLAG GSDVFSVHKS NMTPVEHRFK  60
   61 VWRAVFLLLL MEIHVLRRLI ESFYVFKYSP SARMHILGYF AGLFFYVTAP LSLCSNIAPE 120
  121 VAGFV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [196-343]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNQVAEFIAN GKSHTSAPEF NLLSSISPLM KLGSLQWIGG AIFLWGWIHQ RRCHAILGSL  60
   61 RENPSQAKEY IIPYGDWFGM VSSPHFLAEI VLYAGLLIAS GGTDITIWLL FGFVAANLTY 120
  121 AAGETHRWYL RKFENYPANR HAIFPYVY

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 9.468521
Match: PF02544.7
Description: No description for PF02544.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle