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View Structure Prediction Details

Protein: RER1_ARATH
Organism: Arabidopsis thaliana
Length: 433 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RER1_ARATH.

Description E-value Query
Range
Subject
Range
RETIC_ARATH - Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana GN=RE PE=1 SV=1
487.0 [0..140] [433..140]

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Predicted Domain #1
Region A:
Residues: [1-135]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSISLKISHI SSFSNDGFNS VKQCRVSQRF EIRSVCFRRS PGVESRRIHL NSDLSSRNLR  60
   61 NRCVGSDVVT GEISGRSIPD WAYSGVKDET LSDLEPELDD GDGGDENGNN DGGGNGGNGD 120
  121 GGGGGGDGEG DDGED

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [136-250]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EADKAEEKEF GPILKFEEVM KETERRGITL PEDMLEAAKS VGIRKLFLLR YLDLQGSVWP  60
   61 LGFLMRSCAM LRNRMLADPS FLFKVGTEVA IDSCCATFAE VQKRGEDFWS EFELY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [251-433]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AADLLVGLVV DVALVGLLAP YARIGKPSVA STGLFKDLKR ACASLPSSVF EAERPGCKFS  60
   61 VNQRIATFFY KGLLYGSVGF GCGLIGQGIA NLIMTAKRSV KKSEEDVPIP PLFESAALWG 120
  121 VFLGLSSNAR YQIINGLERV VEGSTAAKRI PVVAMAFTVG VRFANNVYGG MQFVDWAKLS 180
  181 GVQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle