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View Structure Prediction Details

Protein: GGPPB_ARATH
Organism: Arabidopsis thaliana
Length: 357 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GGPPB_ARATH.

Description E-value Query
Range
Subject
Range
gi|58201026 - gi|58201026|gb|AAW66658.1| geranyl diphosphate synthase [Picrorhiza kurrooa]
347.0 [0..1] [357..22]

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Predicted Domain #1
Region A:
Residues: [1-357]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTLSSSSL FIQFRGRRYN SLSSFNNLQK RTVLSLSCAL SSQGGDMIPP EGKSNDRNSA  60
   61 FDFKSYMIRK AESVSAALNV SVPLQEPLTI QEAVRYSLLA GGKRVRPLLC IAACELVGGD 120
  121 EATAMSAACA VEMIHTSSLI HDDLPCMDDA DLRRGKPTNH KEFGEDMAVL AGDALLALAF 180
  181 EHMTFVSNGL VAPERMIRAV MELAKAIGTK GLVAGQVTDL CSQGLNPDDV GLERLEFIHL 240
  241 HKTAALLEAA AVLGAIMGGG TEEEIEKLRK YARCIGLLFQ VVDDILDVTE STKELGKTAG 300
  301 KDVMAGKLTY PRLIGLERSR EVAEKLRREA AEQLLGFDSD KAAPLVALAS YIACRHN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 81.69897
Match: 2j1pA
Description: No description for 2j1pA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle