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View Structure Prediction Details

Protein: gi|21553575, gi|...
Organism: Arabidopsis thaliana
Length: 305 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21553575, gi|....

Description E-value Query
Range
Subject
Range
CTDSL_CHICK - CTD small phosphatase-like protein OS=Gallus gallus GN=NFI1 PE=2 SV=2
gi|542165764|ref... - PREDICTED: CTD small phosphatase-like protein isoform X2 [Zonotrichia albicollis]
gi|224044589 - gi|224044589|ref|XP_002196491.1| PREDICTED: CTD (carboxy-terminal domain, RNA polymerase II, polypep...
301.0 [0..5] [282..2]

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Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDDDSPSSR DLDAQNPYDR LLALDTSTVD PNCNLDSVSA IYLAMKSSKL ECVDERGQDS  60
   61 LITSVCMEDE EDEELDEFDP 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.491 N/A N/A a.42.1 MDM2
View Download 0.414 N/A N/A a.47.2 t-snare proteins
View Download 0.375 N/A N/A d.58.13 Anticodon-binding domain of PheRS
View Download 0.371 N/A N/A a.4.12 TrpR-like
View Download 0.370 N/A N/A b.55.1 PH domain-like

Predicted Domain #2
Region A:
Residues: [81-305]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YLFIKNLPNL SSVVPTFRPV LLPKQTRSCP PISLVLDLDE TLVHSTLEPC GEVDFTFPVN  60
   61 FNEEEHMVYV RCRPHLKEFM ERVSRLFEII IFTASQSIYA EQLLNVLDPK RKLFRHRVYR 120
  121 DSCVFFDGNY LKDLSVLGRD LSRVIIVDNS PQAFGFQVEN GVPIESWFND PSDKELLHLL 180
  181 PFLESLIGVE DVRPMIAKKF NLREKIDAAV AAPEYPAEAG DPFER

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 62.0
Match: 2hhlA
Description: No description for 2hhlA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle