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View Structure Prediction Details

Protein: FRO1_ARATH
Organism: Arabidopsis thaliana
Length: 704 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FRO1_ARATH.

Description E-value Query
Range
Subject
Range
gi|1694711 - gi|1694711|emb|CAA70769.1| FRO1 [Arabidopsis thaliana]
536.0 [0..1] [704..1]

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Predicted Domain #1
Region A:
Residues: [1-118]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVGEMNKEV IDKVIKFLMM VILMGTIVIW IMMPTSTYKE IWLTSMRAKL GKSIYYGRPG  60
   61 VNLLVYMFPM ILLAFLGCIY LHLKKSTTVN QFNSGVEKKR AKFGALRRPM LVNGPLGI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [119-286]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTVTEVMFLT MFMALLLWSL ANYMYRTFVN VTSESAATDG NNLWQARLDL IAVRIGIVGN  60
   61 ICLAFLFYPV ARGSSLLAAV GLTSESSIKY HIWLGHLVMI IFTSHGLCYF IYWISKNQLV 120
  121 SKMLEWDRTA VSNLAGEIAL VAGLMMWVTT YPKIRRRLFE VFFYSHYL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 19.229148
Match: PF01794.10
Description: No description for PF01794.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [287-583]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YIVFMLFFVF HVGISHALIP LPGFYIFLVD RFLRFLQSRN NVKLVSARVL PCDTVELNFS  60
   61 KNPMLMYSPT STMFVNIPSI SKLQWHPFTI ISSSKLEPET LSVMIKSQGK WSTKLYDMLS 120
  121 SSSSDQINRL AVSVEGPYGP SSTDFLRHES LVMVSGGSGI TPFISIVRDL FYMSSTHKCK 180
  181 IPKMTLICAF KNSSDLSMLD LILPTSGLTT DMASFVDIQI KAFVTREEKT SVKESTHNRN 240
  241 IIKTRHFKPN VSDQPISPIL GPNSWLCLAA ILSSSFMIFI VIIAIITRYH IHPIDQN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.69897
Match: 1cqxA
Description: Flavohemoglobin, N-terminal domain; Flavohemoglobin, central domain; Flavohemoglobin, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.923682288946602 bayes_pls_golite062009
oxidoreductase activity 0.6192827046908 bayes_pls_golite062009

Predicted Domain #4
Region A:
Residues: [584-704]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEKYTWAYKS LIYLVSISIT VVTTSTAAML WNKKKYYAKN DQYVDNLSPV IIESSPQQLI  60
   61 SQSTDIHYGE RPNLNKLLVG LKGSSVGILV CGPKKMRQKV AKICSFGSAE NLHFESISFS 120
  121 W

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 3.958607
Match: PF08030.3
Description: No description for PF08030.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle