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View Structure Prediction Details

Protein: LIP4_ARATH
Organism: Arabidopsis thaliana
Length: 373 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LIP4_ARATH.

Description E-value Query
Range
Subject
Range
GDL2_ARATH - GDSL esterase/lipase At1g09390 OS=Arabidopsis thaliana GN=At1g09390 PE=2 SV=1
323.0 [0..1] [371..1]

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Predicted Domain #1
Region A:
Residues: [1-373]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLFLYSNT FSFFFITLVS LALLILRQPS RAASCTARPV IFNFGDSNSD TGGLVAGLGY  60
   61 PIGFPNGRLF FRRSTGRLSD GRLLIDFLCQ SLNTSLLRPY LDSLGRTRFQ NGANFAIAGS 120
  121 PTLPKNVPFS LNIQVKQFSH FKSRSLELAS SSNSLKGMFI SNNGFKNALY MIDIGQNDIA 180
  181 RSFARGNSYS QTVKLIPQII TEIKSSIKRL YDEGGRRFWI HNTGPLGCLP QKLSMVKSKD 240
  241 LDQHGCLVSY NSAATLFNQG LDHMCEELRT ELRDATIIYI DIYAIKYSLI ANSNQYGFKS 300
  301 PLMACCGYGG TPYNYNVKIT CGHKGSNVCE EGSRFISWDG IHYTETANAI VAMKVLSMHY 360
  361 SKPPTPFHFF CRR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.22
Match: 1escA
Description: THE MOLECULAR MECHANISM OF ENANTIORECOGNITION BY ESTERASES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.471286748048633 bayes_pls_golite062009
catalytic activity 0.319044203629006 bayes_pls_golite062009
protein binding 0.0277911089352154 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle