YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20260004, gi\|...
Organism:	Arabidopsis thaliana
Length:	452 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20260004, gi|....

Description	E-value	Query Range	Subject Range
gi\|109390302 - gi\|109390302\|gb\|ABG33750.1\| cysteine protease [Hevea brasiliensis]	454.0	[0..8]	[452..1]
gi\|62526575 - gi\|62526575\|gb\|AAX84673.1\| cysteine protease CP1 [Manihot esculenta]	454.0	[0..4]	[452..7]
gi\|46401612 - gi\|46401612\|dbj\|BAD16614.1\| cysteine proteinase [Dianthus caryophyllus]	453.0	[0..1]	[452..1]
gi\|5777889 - gi\|5777889\|emb\|CAB53515.1\| cysteine protease [Solanum tuberosum]	452.0	[0..1]	[452..1]
gi\|2828252, gi\|7... - pir\|\|T06416 cysteine proteinase (EC 3.4.22.-) precursor - tomato, gi\|5726641\|gb\|AAD48496.1\|AF172856_...	451.0	[0..1]	[452..1]
gi\|87240770 - gi\|87240770\|gb\|ABD32628.1\| Granulin; Peptidase C1A, papain [Medicago truncatula]	448.0	[0..2]	[451..7]
gi\|2511693, gi\|7... - pir\|\|T12041 cysteine proteinase (EC 3.4.22.-) 3 precursor - kidney bean, gi\|2511693\|emb\|CAB17076.1\| ...	446.0	[0..10]	[452..1]
ORYA_ORYSA - Oryzain alpha chain precursor (EC 3.4.22.-) - Oryza sativa (Rice) ORYA_ORYSJ - Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2	445.0	[0..34]	[452..31]
gi\|162459393, gi... - gi\|6682829\|dbj\|BAA88898.1\| cysteine protease component of protease-inhibitor complex [Zea mays], gi\|...	445.0	[0..34]	[452..35]
gi\|89274062 - gi\|89274062\|dbj\|BAE80740.1\| cysteine proteinase [Platycodon grandiflorus]	445.0	[0..9]	[450..8]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSIKSITL ALLIFSVLLI SLSLGSVTAT ETTRNEAEAR RMYERWLVEN RKNYNGLGEK  60
   61 ERRFEIFKDN LKFVEEHSSI PNRTYEVGLT RFADLTNDEF RAIYLRSKME RTRVP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.26
Match:	1pciA
Description:	Caricain (protease omega)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [116-353]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKGEKYLYKV GDSLPDAIDW RAKGAVNPVK DQGSCGSCWA FSAIGAVEGI NQIKTGELIS  60
   61 LSEQELVDCD TSYNDGCGGG LMDYAFKFII ENGGIDTEED YPYIATDVNV CNSDKKNTRV 120
  121 VTIDGYEDVP QNDEKSLKKA LANQPISVAI EAGGRAFQLY TSGVFTGTCG TSLDHGVVAV 180
  181 GYGSEGGQDY WIVRNSWGSN WGESGYFKLE RNIKESSGKC GVAMMASYPT KSSGSNPP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.69897
Match:	1s4vA
Description:	The 2.0 A crystal structure of the KDEL-tailed cysteine endopeptidase functioning in programmed cell death of Ricinus communis endosperm
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [354-452]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPPAPSPVVC DKSNTCPAKS TCCCLYEYNG KCYSWGCCPY ESATCCDDGS SCCPQSYPVC  60
   61 DLKANTCRMK GNSPLSIKAL TRGPAIATTK STNMLVGSA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits