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View Structure Prediction Details

Protein: AB7G_ARATH
Organism: Arabidopsis thaliana
Length: 725 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AB7G_ARATH.

Description E-value Query
Range
Subject
Range
gi|22137204, gi|... - gi|22137204|gb|AAM91447.1| At2g01320/F10A8.20 [Arabidopsis thaliana], gi|13605839|gb|AAK32905.1|AF36...
510.0 [0..1] [725..1]

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Predicted Domain #1
Region A:
Residues: [1-64]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPFGGKSLA DVVSGIGGNG VGGALAAVAA ALLVRLFAGP GIALLPEDEA EDDYAETEDG  60
   61 GGDS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 66.09691
Match: 2hydA
Description: No description for 2hydA was found.

Predicted Domain #2
Region A:
Residues: [65-430]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IRPVTIRWRN ITCSLSDKSS KSVRFLLKNV SGEAKPGRLL AIMGPSGSGK TTLLNVLAGQ  60
   61 LSLSPRLHLS GLLEVNGKPS SSKAYKLAFV RQEDLFFSQL TVRETLSFAA ELQLPEISSA 120
  121 EERDEYVNNL LLKLGLVSCA DSCVGDAKVR GISGGEKKRL SLACELIASP SVIFADEPTT 180
  181 GLDAFQAEKV METLQKLAQD GHTVICSIHQ PRGSVYAKFD DIVLLTEGTL VYAGPAGKEP 240
  241 LTYFGNFGFL CPEHVNPAEF LADLISVDYS SSETVYSSQK RVHALVDAFS QRSSSVLYAT 300
  301 PLSMKEETKN GMRPRRKAIV ERTDGWWRQF FLLLKRAWMQ ASRDGPTNKV RARMSVASAV 360
  361 IFGSVF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 70.69897
Match: 1z47A
Description: Structure of the ATPase subunit CysA of the putative sulfate ATP-binding cassette (ABC) transporter from Alicyclobacillus acidocaldarius
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [431-655]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WRMGKSQTSI QDRMGLLQVA AINTAMAALT KTVGVFPKER AIVDRERSKG SYSLGPYLLS  60
   61 KTIAEIPIGA AFPLMFGAVL YPMARLNPTL SRFGKFCGIV TVESFAASAM GLTVGAMVPS 120
  121 TEAAMAVGPS LMTVFIVFGG YYVNADNTPI IFRWIPRASL IRWAFQGLCI NEFSGLKFDH 180
  181 QNTFDVQTGE QALERLSFGG RRIRETIAAQ SRILMFWYSA TYLLL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 26.769551
Match: PF01061.15
Description: No description for PF01061.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [656-725]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKNKPKYQKL ELLVDNGETG NSGVQLDKAE VDQTEKPEDD DINQPLDDQN QTSDSDDELD  60
   61 EIRPFVLEGL 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.14
Match: 4hb1A
Description: A DESIGNED FOUR HELIX BUNDLE PROTEIN.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle