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View Structure Prediction Details

Protein: gi|15237961, gi|...
Organism: Arabidopsis thaliana
Length: 296 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15237961, gi|....

Description E-value Query
Range
Subject
Range
PIGX - phosphatidylinositol glycan anchor biosynthesis, class X
266.0 [0..86] [280..43]

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Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFFRAATHP DDLRRRVPSP AIMVGTNYRD SHEFFDSDTI CISDQYIMES YFTTYTSLDD  60
   61 SEFRNFLLLQ QCSDKVPTQD 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.405 a.61.1 Retroviral matrix proteins
View Download 0.328 a.60.1 SAM/Pointed domain
View Download 0.327 c.15.1 BRCT domain
View Download 0.319 d.58.38 Urease metallochaperone UreE, C-terminal domain
View Download 0.303 d.100.1 L9 N-domain-like

Predicted Domain #2
Region A:
Residues: [81-296]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNIVPATSFI QHRNITGEGS HRNLITSIKL LLHHSESQFR ELVIVERLPL GVFADPFELQ  60
   61 SLQQRRAFSD VSVFGDTNLE LPSFRSNRSV VEIHVEISSR NYENGEISFK LPLHARYQPL 120
  121 DDSGYSRVEF GEPDLFLCSS HVQNQRRERR RCLVLSIGRS KTETRSVFWD IPAGIRGHTE 180
  181 YVSALTFAAA VFSAFSILVA SVLSSKGESC KNLKQS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle