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View Structure Prediction Details

Protein: gi|17473665, gi|...
Organism: Arabidopsis thaliana
Length: 258 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17473665, gi|....

Description E-value Query
Range
Subject
Range
gi|25299024, gi|... - gi|4741960|gb|AAD28777.1|AF134130_1 Lhcb6 protein [Arabidopsis thaliana], pir||T52314 chlorophyll a/...
257.0 [0..1] [258..1]

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Predicted Domain #1
Region A:
Residues: [1-68]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMAVSGAVL SGLGSSFLTG GKRGATALAS GVGTGAQRVG RKTLIVAAAA AQPKKSWIPA  60
   61 VKGGGNFL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [69-258]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPEWLDGSLP GDFGFDPLGL GKDPAFLKWY REAELIHGRW AMAAVLGIFV GQAWSGVAWF  60
   61 EAGAQPDAIA PFSFGSLLGT QLLLMGWVES KRWVDFFNPD SQSVEWATPW SKTAENFANY 120
  121 TGDQGYPGGR FFDPLGLAGK NRDGVYEPDF EKLERLKLAE IKHSRLAMVA MLIFYFEAGQ 180
  181 GKTPLGALGL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.522879
Match: 2o012
Description: No description for 2o012 was found.

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