YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15242695, gi\|...
Organism:	Arabidopsis thaliana
Length:	80 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15242695, gi|....

Description	E-value	Query Range	Subject Range
gi\|9294163 - gi\|9294163\|dbj\|BAB02065.1\| unnamed protein product [Arabidopsis thaliana]	105.0	[0..2]	[80..214]
gi\|47848486, gi\|... - gi\|50899034\|ref\|XP_450305.1\| NOI protein [Oryza sativa (japonica cultivar-group)], gi\|47848486\|dbj\|B... gi\|7489517, gi\|2... - pir\|\|T02212 NOI protein - rice, gi\|2642217\|gb\|AAB86939.1\| NOI protein [Oryza sativa]	95.0	[0..1]	[78..1]
gi\|7489791, gi\|2... - pir\|\|T01320 NOI protein, nitrate-induced - maize, gi\|2895781\|gb\|AAC03022.1\| nitrate-induced NOI pro...	90.0	[0..1]	[78..1]
gi\|33329202, gi\|... - gi\|33329204\|gb\|AAQ10002.1\| putative nitrate-induced NOI protein; S2 self-incompatibility locus-linke...	89.0	[0..1]	[78..1]
gi\|83571778 - gi\|83571778\|gb\|ABC18335.1\| putative nitrate-induced NOI protein [Oryza sativa (indica cultivar-group...	85.0	[0..3]	[69..116]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAENKGKPLP KFGEWDVNNP ASAEGFTVIF SKASDEKKTK KASGAGPNSL VSPQRNQNSD  60
   61 QNNNHSSQNP KAKNKWFCFR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	53.102373
Match:	PF05627.2
Description:	No description for PF05627.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits