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View Structure Prediction Details

Protein: APBLA_ARATH
Organism: Arabidopsis thaliana
Length: 841 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for APBLA_ARATH.

Predicted Domain #1
Region A:
Residues: [1-60]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPPAASQRY PSPSQPSGKS EVSDLKTQLR QLAGSRAPGV DDSKRDLYKK VISYMTIGID  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 119.0
Match: 2vglB
Description: No description for 2vglB was found.

Predicted Domain #2
Region A:
Residues: [61-695]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSSVFGEMVM CSATSDIVLK KMCYLYVGNY AKGNPDLSLL TINFLQRDCK DEDPMIRGLA  60
   61 LRSLCSLRVP NLVEYLVGPL GSGLKDNNSY VRTIAVTGVL KLYHISPSTC IDADFPATLK 120
  121 SLMLHDSDAQ VVANCLSALQ EIWSLEASHS EEACREKESL LSKPVIYYFL NRIKEFNEWA 180
  181 QCLILELAVK YVPSDSNDIF DIMNLLEDRL QHANGAVVLA TVKVFLQLTL SMTDVHQQVY 240
  241 ERIKSPLLTL VSSGSPEQSY AILSHLHLLV VRAPFIFAAD YKHFYCQYNE PSYVKKLKLE 300
  301 MLTAVANESN TYEIVTELCE YAANVDIAIA RESIRAVGKI ALQQYDVNAI VDRLLQFLEM 360
  361 EKDYVTAETL VLVKDLLRKY PQWSHDCISV VGGISSKNIQ EPKAKAALIW MLGEYAQDMS 420
  421 DAPYVLENLI ENWEEEHSAE VRLHLLTAAM KCFFKRAPET QKALGTALAA GIADFHQDVH 480
  481 DRALFYYRVL QYDVHVAERV VSPPKQAVSV FADTQSSEIK DRVFDEFNSL SVIYQKPSYM 540
  541 FTDKEHRGPF EFSDEVGNIS ITPEASSDIV PAQQYEANDK DLLLGIDEKD ENKGVSNNNG 600
  601 SAYTAPSLES SSNITSQMQE LAISGPATSA TTPQS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.522879
Match: 2z6gA
Description: No description for 2z6gA was found.

Predicted Domain #3
Region A:
Residues: [696-841]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGFDDLFGLG LSTAPAPTPS PPLLKLNARA ALDPGAFQQK WRQLPISLTQ ECSVNPQGIA  60
   61 ALTVPQSLIK HMQSHSIHCI ASGGQSPNFK FFFFAQKESE PSNYLTECII NTSSAKAQIK 120
  121 VKADEQSTCQ AFTTVFETAL SKFGMP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.30103
Match: 1pzdA
Description: Structural Identification of a conserved appendage domain in the carboxyl-terminus of the COPI gamma-subunit.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle