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View Structure Prediction Details

Protein: TLP9_ARATH
Organism: Arabidopsis thaliana
Length: 380 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TLP9_ARATH.

Description E-value Query
Range
Subject
Range
gi|125552479 - gi|125552479|gb|EAY98188.1| hypothetical protein OsI_20103 [Oryza sativa Indica Group]
TLP8_ORYSJ - Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1
560.0 [0..3] [380..29]

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Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFRSLLQEM RSRPHRVVHA AASTANSSDP FSWSELPEEL LREILIRVET VDGGDWPSRR  60
   61 NVVACAGVCR SWRILTKEIV AVPEFSSKLT FPISLKQS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.58
Match: 2e31A
Description: No description for 2e31A was found.

Predicted Domain #2
Region A:
Residues: [99-380]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPRDSLVQCF IKRNRNTQSY HLYLGLTTSL TDNGKFLLAA SKLKRATCTD YIISLRSDDI  60
   61 SKRSNAYLGR MRSNFLGTKF TVFDGSQTGA AKMQKSRSSN FIKVSPRVPQ GSYPIAHISY 120
  121 ELNVLGSRGP RRMRCIMDTI PMSIVESRGV VASTSISSFS SRSSPVFRSH SKPLRSNSAS 180
  181 CSDSGNNLGD PPLVLSNKAP RWHEQLRCWC LNFHGRVTVA SVKNFQLVAV SDCEAGQTSE 240
  241 RIILQFGKVG KDMFTMDYGY PISAFQAFAI CLSSFETRIA CE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 107.0
Match: 1s31A
Description: Crystal Structure Analysis of the human Tub protein (isoform a) spanning residues 289 through 561
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle