YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: AATP5_ARATH
Organism: Arabidopsis thaliana
Length: 530 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AATP5_ARATH.

Description E-value Query
Range
Subject
Range
gi|37528354, gi|... - gi|37528354|ref|NP_931699.1| ATP-dependent metalloprotease [Photorhabdus luminescens subsp. laumondi...
311.0 [0..29] [525..1]

Back

Predicted Domain #1
Region A:
Residues: [1-530]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLETGAIWGI TGTTVTSFMF FWAIYKQYVP AHFRAYVERY FHKMIGWISY YVDIKFTEYT  60
   61 DEGLKRSQAY DSIRNYLASK STALAKRLKA NETKNSKSLV FSMDDHEEIE DEFEGVKVKW 120
  121 YSNVKVIQPQ SNYGQRSSEE RRHFTLSFHR RHRGMIIETY LDHVLREGKA IGLMNRERKL 180
  181 YTNNSSQEWY PWRSGKWSNV PFHHPATFET LAMDPEKKEG IKKDLIKFSK GKDYYKKVGK 240
  241 PWKRGYLLFG PPGTGKSTMI AAIANFLDYD VYDLELTTVK DNSELKKLLL DTTSKSIIVI 300
  301 EDIDCSLDLT GQRKKKKEED EEEDGEEKKE GEKKPKVDDK QSKVTLSGLL NSIDGLWSAC 360
  361 SGEKIIVFTT NFVDKLDPAL IRRGRMDNHI EMSYCKFEAF KVLAKNYLEI ETHDLYGEIE 420
  421 RKLEETDMSP ADVAETLMPK SDEEDADICI KRLVKTLEEE KEKARKLAEE EEKKKAEKEA 480
  481 KKMKKAEEAE EKKKKTEEDE KKEKVKAKEE NGNVSQQNGN SIDLNKKSDS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.09691
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle