YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: AAP3_ARATH
Organism: Arabidopsis thaliana
Length: 476 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AAP3_ARATH.

Description E-value Query
Range
Subject
Range
gi|21553710 - gi|21553710|gb|AAM62803.1| amino acid carrier, putative [Arabidopsis thaliana]
236.0 [0..1] [476..1]

Back

Predicted Domain #1
Region A:
Residues: [1-476]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQNHQTVLA VDMPQTGGSK YLDDDGKNKR TGSVWTASAH IITAVIGSGV LSLAWATAQL  60
   61 GWLAGPVVML LFSAVTYFTS SLLAACYRSG DPISGKRNYT YMDAVRSNLG GVKVTLCGIV 120
  121 QYLNIFGVAI GYTIASAISM MAIKRSNCFH KSGGKDPCHM NSNPYMIAFG LVQILFSQIP 180
  181 DFDQLWWLSI LAAVMSFTYS SAGLALGIAQ VVVNGKVKGS LTGISIGAVT ETQKIWRTFQ 240
  241 ALGDIAFAYS YSIILIEIQD TVKSPPSEEK TMKKATLVSV SVTTMFYMLC GCMGYAAFGD 300
  301 LSPGNLLTGF GFYNPYWLLD IANAAIVIHL IGAYQVYCQP LFAFIEKQAS IQFPDSEFIA 360
  361 KDIKIPIPGF KPLRLNVFRL IWRTVFVIIT TVISMLLPFF NDVVGLLGAL GFWPLTVYFP 420
  421 VEMYIAQKKI PRWSTRWVCL QVFSLGCLVV SIAAAAGSIA GVLLDLKSYK PFRSEY

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.46
Match: 2a65A
Description: Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle