YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9279617, gi\|4...
Organism:	Arabidopsis thaliana
Length:	532 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9279617, gi|4....

Description	E-value	Query Range	Subject Range
gi\|77554670, gi\|... - gi\|77554670\|gb\|ABA97466.1\| regulator of chromosome condensation, putative, expressed [Oryza sativa (...	420.0	[0..10]	[532..13]
gi\|68355286 - gi\|68355286\|ref\|XP_685556.1\| PREDICTED: similar to hect domain and RLD 4 (predicted) [Danio rerio]	402.0	[0..63]	[493..75]
gi\|60098971, gi\|... - gi\|86129504\|ref\|NP_001034387.1\| hect domain and RLD 3 [Gallus gallus], gi\|60098971\|emb\|CAH65316.1\| h...	397.0	[0..118]	[498..3]
gi\|109089621 - gi\|109089621\|ref\|XP_001087737.1\| PREDICTED: similar to hect domain and RLD 4 isoform b isoform 6 [Ma...	394.0	[0..118]	[491..3]
gi\|114630756, gi... - gi\|114630758\|ref\|XP_001167783.1\| PREDICTED: hect domain and RLD 4 isoform 9 [Pan troglodytes], gi\|11...	394.0	[0..118]	[491..3]
gi\|55250203 - gb\|AAH86223.1\| Unknown (protein for MGC:98711) [Xenopus laevis] gi\|74188723, gi\|... - gi\|74188723\|dbj\|BAE28095.1\| unnamed protein product [Mus musculus], gi\|32451488\|ref\|NP_080377.2\| hec...	393.0	[0..118]	[491..3]
gi\|73952749 - gi\|73952749\|ref\|XP_859968.1\| PREDICTED: similar to hect domain and RLD 4 isoform b isoform 8 [Canis ...	393.0	[0..118]	[491..3]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT  60
   61 ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD MCNKRVIFKP MNE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [114-532]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EERQEMKRRC GGSWKLVLRF LLAGEACCRR EKSQAVAGPG HSVAVTSKGE VYTFGYNNSG  60
   61 QLGHGHTEDE ARIQPVRSLQ GVRIIQAAAG AARTMLISDD GKVYACGKES FGEAEYGGQG 120
  121 TKPVTTPQLV TSLKNIFVVQ AAIGNYFTAV LSREGKVYTF SWGNDGRLGH QTEAADVEPR 180
  181 PLLGPLENVP VVQIAAGYCY LLALACQPNG MSVYSVGCGL GGKLGHGSRT DEKYPRVIEQ 240
  241 FQILNLQPRV VAAGAWHAAV VGQDGRVCTW GWGRYGCLGH GNEECESVPK VVEGLSHVKA 300
  301 VHVATGDYTT FVVSDDGDVY SFGCGESASL GHHPSFDEQG NRHANVLSPT VVTSLKQVNE 360
  361 RMVQISLTNS IYWNAHTFAL TESGKLFAFG AGDQGQLGTE LGKNQKERCV PEKVDIDLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.154902
Match:	1a12A
Description:	Regulator of chromosome condensation RCC1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits